output_format_concept.hpp File Reference

Provides seqan3::sam_file_output_format and auxiliary classes. More...

#include <fstream>
#include <string>
#include <vector>
#include <seqan3/alphabet/cigar/cigar.hpp>
#include <seqan3/alphabet/gap/gapped.hpp>
#include <seqan3/alphabet/nucleotide/dna5.hpp>
#include <seqan3/alphabet/quality/aliases.hpp>
#include <seqan3/alphabet/quality/phred42.hpp>
#include <seqan3/io/sam_file/header.hpp>
#include <seqan3/io/sam_file/output_options.hpp>
#include <seqan3/io/sam_file/sam_flag.hpp>
#include <seqan3/io/sam_file/sam_tag_dictionary.hpp>
#include <seqan3/utility/type_list/type_list.hpp>

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Classes
struct	seqan3::detail::sam_file_output_format_exposer< format_type >
	Internal class used to expose the actual format interface to write alignment records into the file. More...

Namespaces
	seqan3
	The main SeqAn3 namespace.
	seqan3::detail
	The internal SeqAn3 namespace.

Variables
template<typename t >
constexpr bool	seqan3::detail::is_type_list_of_sam_file_output_formats_v = false
	Auxiliary value metafuncton that checks whether a type is a seqan3::type_list and all types meet seqan3::sam_file_output_format [default is false]. More...
template<typename ... ts>
constexpr bool	seqan3::detail::is_type_list_of_sam_file_output_formats_v< type_list< ts... > > = (sam_file_output_format<ts> && ...)
	Auxiliary value metafuncton that checks whether a type is a seqan3::type_list and all types meet seqan3::sam_file_output_format [overload]. More...
template<typename t >
SEQAN3_CONCEPT	seqan3::detail::type_list_of_sam_file_output_formats = is_type_list_of_sam_file_output_formats_v<t>
	Auxiliary concept that checks whether a type is a seqan3::type_list and all types meet seqan3::sam_file_output_format. More...

Detailed Description

Provides seqan3::sam_file_output_format and auxiliary classes.

Author

Svenja Mehringer <svenja.mehringer AT fu-berlin.de>